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Tobin DM, Roca FJ, Oh SF, McFarland R, Vickery TW, Ray JP, Ko DC, Zou Y, Bang ND, Chau TTH, et al. Host genotype-specific therapies can optimize the inflammatory response to mycobacterial infections. Cell. 2012  ;148(3):434-46.

Harman AN, Lai J, Turville S, Samarajiwa S, Gray L, Marsden V, Mercier SK, Mercier S, Jones K, Nasr N, et al. HIV infection of dendritic cells subverts the IFN induction pathway via IRF-1 and inhibits type 1 IFN production. Blood. 2011  ;118(2):298-308.

Sapkota BR, Macdonald M, Berrington WR, E Misch A, Ranjit C, M Siddiqui R, Kaplan G, Hawn TR. Association of TNF, MBL, and VDR polymorphisms with leprosy phenotypes. Hum Immunol. 2010  ;71(10):992-8.

Berrington WR, Iyer R, Wells RD, Smith KD, Skerrett SJ, Hawn TR. NOD1 and NOD2 regulation of pulmonary innate immunity to Legionella pneumophila. Eur J Immunol. 2010  ;40(12):3519-27.

DeWitte-Orr SJ, Mehta DR, Collins SE, Suthar MS, Gale M, Mossman KL. Long double-stranded RNA induces an antiviral response independent of IFN regulatory factor 3, IFN-beta promoter stimulator 1, and IFN. J Immunol. 2009  ;183(10):6545-53.

Giacani L, Godornes C, Puray-Chavez M, Guerra-Giraldez C, Tompa M, Lukehart SA, Centurion-Lara A. TP0262 is a modulator of promoter activity of tpr Subfamily II genes of Treponema pallidum ssp. pallidum. Mol Microbiol. 2009  ;72(5):1087-99.

Gilchrist M, Henderson WR, Clark AE, Simmons RM, Ye X, Smith KD, Aderem A. Activating transcription factor 3 is a negative regulator of allergic pulmonary inflammation. J Exp Med. 2008  ;205(10):2349-57.

Lovegrove FE, Gharib SA, Patel SN, Hawkes CA, Kain KC, W Liles C. Expression microarray analysis implicates apoptosis and interferon-responsive mechanisms in susceptibility to experimental cerebral malaria. Am J Pathol. 2007  ;171(6):1894-903.

Mibayashi M, Martinez-Sobrido L, Loo Y-M, Cárdenas WB, Gale M, García-Sastre A. Inhibition of retinoic acid-inducible gene I-mediated induction of beta interferon by the NS1 protein of influenza A virus. J Virol. 2007  ;81(2):514-24.

Wagoner J, Austin M, Green J, Imaizumi T, Casola A, Brasier A, Khabar KSA, Wakita T, Gale M, Polyak SJ. Regulation of CXCL-8 (interleukin-8) induction by double-stranded RNA signaling pathways during hepatitis C virus infection. J Virol. 2007  ;81(1):309-18.

Walthers D, Carroll RK, Navarre WWiley, Libby SJ, Fang FC, Kenney LJ. The response regulator SsrB activates expression of diverse Salmonella pathogenicity island 2 promoters and counters silencing by the nucleoid-associated protein H-NS. Mol Microbiol. 2007  ;65(2):477-93.

Malathi K, Dong B, Gale M, Silverman RH. Small self-RNA generated by RNase L amplifies antiviral innate immunity. Nature. 2007  ;448(7155):816-9.

Bang I-S, Frye JG, McClelland M, Velayudhan J, Fang FC. Alternative sigma factor interactions in Salmonella: sigma and sigma promote antioxidant defences by enhancing sigma levels. Mol Microbiol. 2005  ;56(3):811-23.

Li K, Chen Z, Kato N, Gale M, Lemon SM. Distinct poly(I-C) and virus-activated signaling pathways leading to interferon-beta production in hepatocytes. J Biol Chem. 2005  ;280(17):16739-47.

Barbet AF, Agnes JT, Moreland AL, Lundgren AM, A Alleman R, Noh SM, Brayton KA, Munderloh UG, Palmer GH. Identification of functional promoters in the msp2 expression loci of Anaplasma marginale and Anaplasma phagocytophilum. Gene. 2005  ;353(1):89-97.

Ogushi K-ichi, Wada A, Niidome T, Okuda T, Llanes R, Nakayama M, Nishi Y, Kurazono H, Smith KD, Aderem A, et al. Gangliosides act as co-receptors for Salmonella enteritidis FliC and promote FliC induction of human beta-defensin-2 expression in Caco-2 cells. J Biol Chem. 2004  ;279(13):12213-9.

Cousin S, Roberts MC, Whittington WLH. Insertion of a thymine (+T) in the 13 base pair inverted repeat of the Neisseria gonorrhoeae mtr promoter region and antibiotic susceptibility. Int J Antimicrob Agents. 2004  ;23(4):418-9.

Cousin SL, Whittington WLH, Roberts MC. Acquired macrolide resistance genes and the 1 bp deletion in the mtrR promoter in Neisseria gonorrhoeae. J Antimicrob Chemother. 2003  ;51(1):131-3.

Cousin S, Whittington WLH, Roberts MC. Acquired macrolide resistance genes in pathogenic Neisseria spp. isolated between 1940 and 1987. Antimicrob Agents Chemother. 2003  ;47(12):3877-80.

Fredericksen B, Akkaraju GR, Foy E, Wang C, Pflugheber J, Chen ZJ, Gale M. Activation of the interferon-beta promoter during hepatitis C virus RNA replication. Viral Immunol. 2002  ;15(1):29-40.

Chan K, Knaak T, Satkamp L, Humbert O, Falkow S, Ramakrishnan L. Complex pattern of Mycobacterium marinum gene expression during long-term granulomatous infection. Proc Natl Acad Sci U S A. 2002  ;99(6):3920-5.

Hawn TR, Ozinsky A, Underhill DM, Buckner FS, Akira S, Aderem A. Leishmania major activates IL-1 alpha expression in macrophages through a MyD88-dependent pathway. Microbes Infect. 2002  ;4(8):763-71.

Suarez CE, Palmer GH, Hötzel I, Hines SA, McElwain TF. Sequence and functional analysis of the intergenic regions separating babesial rhoptry-associated protein-1 (rap-1) genes. Exp Parasitol. 1998  ;90(2):189-94.

Drouin R, Angers M, Dallaire N, Rose TM, Khandjian EW, Rousseau F. Structural and functional characterization of the human FMR1 promoter reveals similarities with the hnRNP-A2 promoter region. Hum Mol Genet. 1997  ;6(12):2051-60.

Chen CY, Eckmann L, Libby SJ, Fang FC, Okamoto S, Kagnoff MF, Fierer J, Guiney DG. Expression of Salmonella typhimurium rpoS and rpoS-dependent genes in the intracellular environment of eukaryotic cells. Infect Immun. 1996  ;64(11):4739-43.

Chen CY, Buchmeier NA, Libby S, Fang FC, Krause M, Guiney DG. Central regulatory role for the RpoS sigma factor in expression of Salmonella dublin plasmid virulence genes. J Bacteriol. 1995  ;177(18):5303-9.

Krause M, Fang FC, el-Gedaily A, Libby S, Guiney DG. Mutational analysis of SpvR binding to DNA in the regulation of the Salmonella plasmid virulence operon. Plasmid. 1995  ;34(1):37-47.

McGuire TC, Stephens EB, Palmer GH, McElwain TF, Lichtensteiger CA, Leib SR, Barbet AF. Recombinant vaccinia virus expression of Anaplasma marginale surface protein MSP-1a: effect of promoters, leader sequences and GPI anchor sequence on antibody response. Vaccine. 1994  ;12(5):465-71.

Rose TM, Schultz ER, Todaro GJ. Molecular cloning of the gene for the yeast homolog (ACB) of diazepam binding inhibitor/endozepine/acyl-CoA-binding protein. Proc Natl Acad Sci U S A. 1992  ;89(23):11287-91.